ARTIC Primers Track Settings
 
ARTIC Oxford Nanopore sequencing primers   (All Mapping and Sequencing tracks)

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Data last updated: 2020-04-22 16:26:21

Description

This track shows the primers for the ARTIC network SARS-CoV-2 sequencing protocol, Version 3.

Display Conventions and Configuration

Genomic locations of primers are highlighted. A click on them shows the primer pool.

Methods

Artic Network primer sequences were downloaded from the file Artic Github BED file and converted to bigBed.

Data Access

The raw data can be explored interactively with the Table Browser or combined with other datasets in the Data Integrator tool. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the download server.

Annotations can be converted from binary to ASCII text by our command-line tool bigBedToBed. Instructions for downloading this command can be found on our utilities page. The tool can also be used to obtain features within a given range without downloading the file, for example:

bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/wuhCor1/bbi/artic.bb -chrom=NC_045512v2 -start=0 -end=29902 stdout

Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.